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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_7456282_7456689_F

Intron Information:

Intron Rank:
47
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7456282 - 7456689
Intron Length:
408

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCG|GTAAGTTAA
5'SS Class:
strong_major
3'SS Sequence:
TCTTTGTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TATTCTGTAATT
Flanking Amino Acid:
EIMKSTSRDAVLVFSESLVP
Intron Amino Acid Position:
1999

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.8
0.89
0.9
80.6
29.6
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
89.8
0.89
0.7
87.9
29.4
Minor 5ss
40
-1.1
2.8
49.9
46.4
Minor BPS
65.7
0.57
2
84.68
36.4

Associated Gene:

Gene:
GCN1
Ensembl Gene ID:
ENSAPLG00000010927
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011518
7423151 - 7467106
43956