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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_7457387_7457621_F

Intron Information:

Intron Rank:
49
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7457387 - 7457621
Intron Length:
235

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACAACTG
5'SS Class:
major
3'SS Sequence:
TTTATTTTTCTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTTATTTATTT
Flanking Amino Acid:
RVVLPYLVPKLTTPPVNTRV
Intron Amino Acid Position:
2084

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.7
0.49
1.1
59.9
44.8
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
87.6
0.84
0.7
81.3
36.3
Minor 5ss
33.9
-1.8
3.5
47.5
47.9
Minor BPS
64.4
0.53
1.7
84.57
36.4

Associated Gene:

Gene:
GCN1
Ensembl Gene ID:
ENSAPLG00000010927
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011518
7423151 - 7467106
43956