Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_7457766_7458764_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

7457766 - 7458764

Intron Length:

999

Sequence Information:

Terminal Dinucleotides:

GC-AG

5'SS Sequence:

CTG|GCAAGTACC

5'SS Class:

strong_major

3'SS Sequence:

TTGGACTCTTTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

AGTTAAT

U12 Branch Point Sequence:

TTAATTTGGACT

Flanking Amino Acid:

EKLGTSEEQLEMANCQSVIL

Intron Amino Acid Position:

2132

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

86.5

0.86

86.6

Major BPS

75.6

0.64

1.1

75.7

36.5

Major PPT

70.3

0.46

0.9

66.9

40.2

Minor 5ss

26.8

-2.7

3.6

35.1

34.5

Minor BPS

53.9

0.2

1.5

72.7

38.1

Associated Gene:

Gene:

GCN1

Ensembl Gene ID:

ENSAPLG00000010927

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000011518

7423151 - 7467106

43956