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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_7459035_7459333_F

Intron Information:

Intron Rank:
51
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7459035 - 7459333
Intron Length:
299

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGATGC
5'SS Class:
strong_major
3'SS Sequence:
CTTTCTCCTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACCTCAT
U12 Branch Point Sequence:
TTTGTCTTACCC
Flanking Amino Acid:
SWDALNSITKKLDAGNQLAL
Intron Amino Acid Position:
2222

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.1
0.95
0.8
75.9
34.8
Major BPS
73.5
0.58
1
73.6
32.5
Major PPT
86.5
0.82
0.7
81.2
23.9
Minor 5ss
38.3
-1.3
3.1
50.9
45.7
Minor BPS
65.7
0.47
1.7
77.35
39.1

Associated Gene:

Gene:
GCN1
Ensembl Gene ID:
ENSAPLG00000010927
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011518
7423151 - 7467106
43956