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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_74595_77957_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
74595 - 77957
Intron Length:
3363

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTGAGCGGC
5'SS Class:
major
3'SS Sequence:
CTATTACTTTTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTGTAAT
U12 Branch Point Sequence:
TATCTATTACTT
Flanking Amino Acid:
AVASSCGLRLANYNDLYQWS
Intron Amino Acid Position:
40

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.6
0.56
1.1
57.5
42.3
Major BPS
72.1
0.55
1.2
73.3
39.1
Major PPT
77
0.61
0.8
74.6
35
Minor 5ss
30.8
-2.2
3.3
32.5
42.6
Minor BPS
49.8
0.06
1.8
71.42
39.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018082
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021944
74477 - 95464
20988