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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_7461665_7462788_F

Intron Information:

Intron Rank:
55
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7461665 - 7462788
Intron Length:
1124

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATTGCTT
5'SS Class:
major
3'SS Sequence:
CTTCCCTCATTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GCATTAC
U12 Branch Point Sequence:
CTTCCCTCATTA
Flanking Amino Acid:
LLLGMLGHDEDATRMASAGC
Intron Amino Acid Position:
2440

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.5
0.53
1.1
68
42.6
Major BPS
47.8
-0.1
1.3
39.7
40.1
Major PPT
71.5
0.48
0.8
71
28.5
Minor 5ss
42.8
-0.8
3.4
65
46.3
Minor BPS
50.9
0.03
1.8
65.01
41.7

Associated Gene:

Gene:
GCN1
Ensembl Gene ID:
ENSAPLG00000010927
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011518
7423151 - 7467106
43956