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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_7466353_7466980_F

Intron Information:

Intron Rank:
59
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7466353 - 7466980
Intron Length:
628

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATGAGAC
5'SS Class:
strong_major
3'SS Sequence:
CTTCCTTCCACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGGTAAT
U12 Branch Point Sequence:
CTTCCTTCCACA
Flanking Amino Acid:
KMRAGEQVLESVSKILDTAS
Intron Amino Acid Position:
2630

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.8
0.77
0.9
71.2
32.6
Major BPS
69.2
0.48
1.3
69.7
44.2
Major PPT
80.9
0.7
0.7
75.7
26.5
Minor 5ss
36.8
-1.5
3.3
49.4
47.1
Minor BPS
48.8
-0.1
2
64.68
42

Associated Gene:

Gene:
GCN1
Ensembl Gene ID:
ENSAPLG00000010927
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011518
7423151 - 7467106
43956