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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_7484315_7484402_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
7484315 - 7484402
Intron Length:
88

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGTTAC
5'SS Class:
strong_major
3'SS Sequence:
TTCCCTTTTCTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTGAA
U12 Branch Point Sequence:
CTGTACTGACTT
Flanking Amino Acid:
QNCDDVCRILVGNKNDDPER
Intron Amino Acid Position:
121

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96.6
1.1
0.7
87.5
21.2
Major BPS
74.4
0.61
0.9
63.6
35.5
Major PPT
83.2
0.75
0.7
76.6
32
Minor 5ss
40.5
-1.1
2.8
52
45.2
Minor BPS
47.4
-0.1
1.9
65.37
45.4

Associated Gene:

Gene:
RAB35
Ensembl Gene ID:
ENSAPLG00000029700
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045798
7474006 - 7485210
11205