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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_7492731_7492766_R

Intron Information:

Intron Rank:
9
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
7492731 - 7492766
Intron Length:
36

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
AGT|GCCAGACCC
5'SS Class:
weak_major
3'SS Sequence:
GCCGGAGCCGCAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TGTTCAG
U12 Branch Point Sequence:
AGTGCCAGACCC
Flanking Amino Acid:
FSSGYGAKRSGDEPVGAEGN
Intron Amino Acid Position:
538

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
51.7
0.04
1.4
55.9
39.1
Major BPS
60.8
0.27
1.6
71.4
45.1
Major PPT
51.8
0.04
1
42.3
37.6
Minor 5ss
20.3
-3.4
3.6
28
35.2
Minor BPS
43.6
-0.5
2
55.62
42.1

Associated Gene:

Gene:
BICDL1
Ensembl Gene ID:
ENSAPLG00000010709
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011156
7492671 - 7540379
47709