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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_7504484_7504786_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7504484 - 7504786
Intron Length:
303

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATTTGCC
5'SS Class:
major
3'SS Sequence:
TCTCTCATTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTCAT
U12 Branch Point Sequence:
GCTCTCTCATTC
Flanking Amino Acid:
AEELEQEREQLRLQLWEAYC
Intron Amino Acid Position:
346

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.7
0.63
1
67.8
35.6
Major BPS
82.6
0.81
0.9
83.3
27.7
Major PPT
82.3
0.73
0.8
73.8
35.4
Minor 5ss
40.1
-1.1
3
53.8
43.5
Minor BPS
45.6
-0.3
1.7
52.24
39.4

Associated Gene:

Gene:
BICDL1
Ensembl Gene ID:
ENSAPLG00000010709
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011156
7492671 - 7540379
47709