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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_7504967_7506134_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7504967 - 7506134
Intron Length:
1168

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGAGA
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTTTGGAAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
GCTTTTTTGATT
Flanking Amino Acid:
ERQSHDKDLQLHQSQLELQE
Intron Amino Acid Position:
286

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.7
0.84
0.9
74.8
37
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
74.5
0.55
1.1
79.1
33.2
Minor 5ss
26.2
-2.7
2.9
30.9
42.7
Minor BPS
65.3
0.56
1.2
74.33
37.3

Associated Gene:

Gene:
BICDL1
Ensembl Gene ID:
ENSAPLG00000010709
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011156
7492671 - 7540379
47709