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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_7506282_7508314_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7506282 - 7508314
Intron Length:
2033

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGTAAC
5'SS Class:
strong_major
3'SS Sequence:
CATTCCTCTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTCAT
U12 Branch Point Sequence:
CAGCTCTCATTC
Flanking Amino Acid:
IVRLESLQAEIKMLTDRKRE
Intron Amino Acid Position:
237

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.1
1.02
0.7
86.6
22.3
Major BPS
82.6
0.81
0.9
83.3
27.7
Major PPT
80
0.67
0.8
73.6
30.9
Minor 5ss
30.6
-2.2
2.6
35.8
41.1
Minor BPS
42.9
-0.5
1.7
44.48
37.8

Associated Gene:

Gene:
BICDL1
Ensembl Gene ID:
ENSAPLG00000010709
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011156
7492671 - 7540379
47709