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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_7508432_7535231_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7508432 - 7535231
Intron Length:
26800

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTGAGTCGC
5'SS Class:
major
3'SS Sequence:
TTTCTCCTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GGGTAAT
U12 Branch Point Sequence:
GTAATGCCAGCT
Flanking Amino Acid:
NQRLLDQLSRASEVERQLSL
Intron Amino Acid Position:
198

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.1
0.69
1
63.1
43.4
Major BPS
51.5
0.04
1.5
55.4
48.1
Major PPT
90
0.9
0.6
85
22.5
Minor 5ss
28.7
-2.4
2.7
27.4
36.3
Minor BPS
34.1
-1.1
2.3
51.4
42.3

Associated Gene:

Gene:
BICDL1
Ensembl Gene ID:
ENSAPLG00000010709
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011156
7492671 - 7540379
47709