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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_751000_774543_R

Intron Information:

Intron Rank:
131459
Intron Class:
major
Intron Phase:
Intron Coordinates:
751000 - 774543
Intron Length:
23544

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGACGTT
5'SS Class:
major
3'SS Sequence:
TCTTCTTTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
TCTTCTTTTACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.3
0.53
1.1
69.5
41.5
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
91.8
0.94
0.6
87.1
23.5
Minor 5ss
40.2
-1.1
3.8
63.6
48.1
Minor BPS
71.5
0.67
1.6
78.96
37.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017932
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042585
750715 - 780442
29728