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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_7535448_7540004_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7535448 - 7540004
Intron Length:
4557

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGGCCC
5'SS Class:
strong_major
3'SS Sequence:
TCCCATTATCTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTAAC
U12 Branch Point Sequence:
CCTTCCTAACCT
Flanking Amino Acid:
MHKELTDKLEHLEQEKHELR
Intron Amino Acid Position:
126

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.3
0.78
0.9
66.5
39.1
Major BPS
72
0.55
1
71.8
31.4
Major PPT
69.2
0.43
0.9
61.8
38.8
Minor 5ss
26.6
-2.7
3.1
33.5
41.9
Minor BPS
56.7
0.29
2
75
47.8

Associated Gene:

Gene:
BICDL1
Ensembl Gene ID:
ENSAPLG00000010709
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011156
7492671 - 7540379
47709