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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_7565125_7566464_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7565125 - 7566464
Intron Length:
1340

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAC|GTATGTATA
5'SS Class:
major
3'SS Sequence:
TTCTTTTTTATAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
TTCTTTTTTATA
Flanking Amino Acid:
SKESLLAQEHVSFFEEERSI
Intron Amino Acid Position:
139

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.1
0.57
1.3
79.7
35.3
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
90.6
0.91
0.6
87.5
23
Minor 5ss
46.8
-0.3
2.5
58.7
39.4
Minor BPS
59.5
0.29
1.6
69.68
37.1

Associated Gene:

Gene:
CIT
Ensembl Gene ID:
ENSAPLG00000009657
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022538
7562782 - 7633898
71117
ENSAPLT00000010123
7562782 - 7633898
71117
ENSAPLT00000045146
7562782 - 7633442
70661