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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_7566917_7567963_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
7566917 - 7567963
Intron Length:
1047

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTAGGTAAA
5'SS Class:
major
3'SS Sequence:
TCTTTACTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTGAT
U12 Branch Point Sequence:
TATTCTTTACTT
Flanking Amino Acid:
HSVHQMGYVHRDIKPENVLI
Intron Amino Acid Position:
220

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.7
0.68
1
74.5
37.6
Major BPS
83.5
0.83
0.8
71.6
36.4
Major PPT
86.7
0.83
0.7
80.8
30.2
Minor 5ss
34.1
-1.8
3
42.1
44.8
Minor BPS
70.8
0.73
1.5
84.68
36.4

Associated Gene:

Gene:
CIT
Ensembl Gene ID:
ENSAPLG00000009657
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022538
7562782 - 7633898
71117
ENSAPLT00000010123
7562782 - 7633898
71117
ENSAPLT00000045146
7562782 - 7633442
70661