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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_7568058_7569255_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7568058 - 7569255
Intron Length:
1198

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTAACAATG
5'SS Class:
major
3'SS Sequence:
CTACTGCTTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTTAC
U12 Branch Point Sequence:
ATATCTTTACTT
Flanking Amino Acid:
SAAKMTVNKTVNAKLPVGTP
Intron Amino Acid Position:
252

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.7
0.47
1.2
66.8
44.6
Major BPS
74
0.6
1
65.6
41.1
Major PPT
70.9
0.47
0.9
62
39.7
Minor 5ss
43.1
-0.8
3
59
45.3
Minor BPS
65.6
0.57
1.5
78.82
37.8

Associated Gene:

Gene:
CIT
Ensembl Gene ID:
ENSAPLG00000009657
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022538
7562782 - 7633898
71117
ENSAPLT00000010123
7562782 - 7633898
71117
ENSAPLT00000045146
7562782 - 7633442
70661