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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_7578145_7585593_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
7578145 - 7585593
Intron Length:
7449

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGA|GTAAGTAGG
5'SS Class:
major
3'SS Sequence:
TTTGCTCTTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTCAC
U12 Branch Point Sequence:
TTTGCCTATATT
Flanking Amino Acid:
FIKALGALRSESVFSSVDSP
Intron Amino Acid Position:
431

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75
0.59
1.1
66.4
45.1
Major BPS
82.3
0.8
0.8
83.6
25.8
Major PPT
83.4
0.75
0.7
81.7
30.3
Minor 5ss
36.4
-1.5
2.7
39
40.1
Minor BPS
54.7
0.23
2.1
79.54
43

Associated Gene:

Gene:
CIT
Ensembl Gene ID:
ENSAPLG00000009657
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045146
7562782 - 7633442
70661
ENSAPLT00000022538
7562782 - 7633898
71117
ENSAPLT00000010123
7562782 - 7633898
71117