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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_7594076_7594409_F

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7594076 - 7594409
Intron Length:
334

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAATGGA
5'SS Class:
strong_major
3'SS Sequence:
AATTGCTCTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATAAT
U12 Branch Point Sequence:
TTAGCCTAAATA
Flanking Amino Acid:
SMKKKLLEAEERRHSLENQV
Intron Amino Acid Position:
697

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81
0.73
0.9
70.9
35
Major BPS
80
0.75
1
78.6
31
Major PPT
74.5
0.55
0.9
66.9
39.6
Minor 5ss
26
-2.8
3
31.8
42.6
Minor BPS
61.6
0.36
1.8
71.78
40.8

Associated Gene:

Gene:
CIT
Ensembl Gene ID:
ENSAPLG00000009657
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045146
7562782 - 7633442
70661
ENSAPLT00000022538
7562782 - 7633898
71117
ENSAPLT00000010123
7562782 - 7633898
71117