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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_7594536_7597425_F

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7594536 - 7597425
Intron Length:
2890

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGCAGA
5'SS Class:
major
3'SS Sequence:
CTGCTGCTTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATATGAA
U12 Branch Point Sequence:
TTTGTCTGAATA
Flanking Amino Acid:
QIQQMAEKILELEEKHREAQ
Intron Amino Acid Position:
739

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.4
0.65
1
66.8
40.3
Major BPS
66.7
0.41
1
57.8
39
Major PPT
72.5
0.51
0.9
69.5
36.8
Minor 5ss
33.4
-1.9
2.8
36.7
42.5
Minor BPS
65.2
0.47
1.5
75.52
36.2

Associated Gene:

Gene:
CIT
Ensembl Gene ID:
ENSAPLG00000009657
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022538
7562782 - 7633898
71117
ENSAPLT00000010123
7562782 - 7633898
71117
ENSAPLT00000045146
7562782 - 7633442
70661