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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_7597522_7599346_F

Intron Information:

Intron Rank:
18
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7597522 - 7599346
Intron Length:
1825

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAAATAT
5'SS Class:
major
3'SS Sequence:
TATCTTCATTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATATAAT
U12 Branch Point Sequence:
ATATCTTCATTT
Flanking Amino Acid:
KEQFYEEKLKVLENQMKKDL
Intron Amino Acid Position:
771

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.5
0.55
1
73.8
30.7
Major BPS
79
0.72
1
78.4
31.2
Major PPT
76
0.59
0.9
74.8
34.8
Minor 5ss
40.7
-1
3.3
56
42.8
Minor BPS
52.5
0.16
1.8
71.4
40

Associated Gene:

Gene:
CIT
Ensembl Gene ID:
ENSAPLG00000009657
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045146
7562782 - 7633442
70661
ENSAPLT00000022538
7562782 - 7633898
71117
ENSAPLT00000010123
7562782 - 7633898
71117