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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_7600010_7602934_F

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
7600010 - 7602934
Intron Length:
2925

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTAAGTACA
5'SS Class:
strong_major
3'SS Sequence:
TTTCTCCTGTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
TGTTTGTCACTT
Flanking Amino Acid:
ANSSLFTQRNMKAQEEMISE
Intron Amino Acid Position:
846

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.1
0.83
1
82.7
29.2
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
81.1
0.7
0.9
81.3
30.7
Minor 5ss
38.4
-1.3
2.7
48.5
40.3
Minor BPS
44.6
-0.3
2.3
68.05
43.4

Associated Gene:

Gene:
CIT
Ensembl Gene ID:
ENSAPLG00000009657
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045146
7562782 - 7633442
70661
ENSAPLT00000022538
7562782 - 7633898
71117
ENSAPLT00000010123
7562782 - 7633898
71117