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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_7603110_7604480_F

Intron Information:

Intron Rank:
21
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7603110 - 7604480
Intron Length:
1371

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAAGGCT
5'SS Class:
major
3'SS Sequence:
TTGCATTCTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACTTAT
U12 Branch Point Sequence:
AGTAACTTATAT
Flanking Amino Acid:
LLELETRLREVGLEHEEQKL
Intron Amino Acid Position:
905

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.5
0.62
1
68.9
35.6
Major BPS
74.8
0.62
0.9
63.7
35.1
Major PPT
80.2
0.68
0.9
77.5
36.5
Minor 5ss
25.8
-2.8
3.5
38.5
46.7
Minor BPS
48
-0
1.9
66.95
42.7

Associated Gene:

Gene:
CIT
Ensembl Gene ID:
ENSAPLG00000009657
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045146
7562782 - 7633442
70661
ENSAPLT00000022538
7562782 - 7633898
71117
ENSAPLT00000010123
7562782 - 7633898
71117