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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_7616224_7617437_F

Intron Information:

Intron Rank:
26
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
7616224 - 7617437
Intron Length:
1214

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTAAC
5'SS Class:
strong_major
3'SS Sequence:
CCCACCTGCCTAG|C
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TGTTTAT
U12 Branch Point Sequence:
TTGTCCTGATCA
Flanking Amino Acid:
KLKAESLSDKLNDLEKKHAM
Intron Amino Acid Position:
1165

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
97.4
1.12
0.6
90.5
20.4
Major BPS
81.3
0.78
1.1
71.7
44.6
Major PPT
57.4
0.17
0.9
49.2
34
Minor 5ss
36
-1.6
2.7
44.9
43.2
Minor BPS
64.4
0.45
1.8
76.39
40.7

Associated Gene:

Gene:
CIT
Ensembl Gene ID:
ENSAPLG00000009657
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022538
7562782 - 7633898
71117
ENSAPLT00000010123
7562782 - 7633898
71117
ENSAPLT00000045146
7562782 - 7633442
70661