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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_7622396_7622601_F

Intron Information:

Intron Rank:
33
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
7622396 - 7622601
Intron Length:
206

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATAAACA
5'SS Class:
major
3'SS Sequence:
TTATTTTCTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCTTAT
U12 Branch Point Sequence:
TTGTGCTTATTT
Flanking Amino Acid:
LRLEGWMKVPRNNKRGQQGW
Intron Amino Acid Position:
1483

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.6
0.58
1
69.4
34.6
Major BPS
76.2
0.65
1.1
65.7
43.2
Major PPT
90.1
0.9
0.7
89.2
27.5
Minor 5ss
39.2
-1.2
2.9
50
46
Minor BPS
58.9
0.36
2
79.35
43.5

Associated Gene:

Gene:
CIT
Ensembl Gene ID:
ENSAPLG00000009657
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022538
7562782 - 7633898
71117
ENSAPLT00000010123
7562782 - 7633898
71117
ENSAPLT00000045146
7562782 - 7633442
70661