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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_7625494_7626903_F

Intron Information:

Intron Rank:
38
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
7625494 - 7626903
Intron Length:
1410

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGGGGC
5'SS Class:
major
3'SS Sequence:
CTTTTGTCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATGTAAC
U12 Branch Point Sequence:
TTTCCCTTGACA
Flanking Amino Acid:
KDLEKLLMIAGEERALCLVD
Intron Amino Acid Position:
1678

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.1
0.66
1.1
67.5
37.8
Major BPS
65.7
0.39
1.2
67.4
36.7
Major PPT
85.9
0.81
0.8
80.7
31.4
Minor 5ss
28.2
-2.5
3.7
40.6
46
Minor BPS
83.9
1.06
1
88.57
27.3

Associated Gene:

Gene:
CIT
Ensembl Gene ID:
ENSAPLG00000009657
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022538
7562782 - 7633898
71117
ENSAPLT00000010123
7562782 - 7633898
71117
ENSAPLT00000045146
7562782 - 7633442
70661