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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_7630410_7630533_F

Intron Information:

Intron Rank:
41
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
7630410 - 7630533
Intron Length:
124

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAGGAGGC
5'SS Class:
major
3'SS Sequence:
ATTCTCTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCTGAT
U12 Branch Point Sequence:
ATGTGCTGATCA
Flanking Amino Acid:
EIEMKQYTLEEFLDKNDHTL
Intron Amino Acid Position:
1792

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.8
0.47
1.1
56.7
41.9
Major BPS
76.2
0.65
1.1
65.3
43.7
Major PPT
86.6
0.82
0.7
81.2
30
Minor 5ss
28.9
-2.4
3.5
32.4
42.6
Minor BPS
47.5
-0.1
2.1
62.56
43.6

Associated Gene:

Gene:
CIT
Ensembl Gene ID:
ENSAPLG00000009657
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045146
7562782 - 7633442
70661
ENSAPLT00000022538
7562782 - 7633898
71117
ENSAPLT00000010123
7562782 - 7633898
71117