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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_7632471_7633072_F

Intron Information:

Intron Rank:
45
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
7632471 - 7633072
Intron Length:
602

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGAAAA
5'SS Class:
strong_major
3'SS Sequence:
TTTTGAATGACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAA
U12 Branch Point Sequence:
TTATTTTTGAAT
Flanking Amino Acid:
EHHRGSSATRSSPNKRGPPT
Intron Amino Acid Position:
1948

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.8
0.82
0.9
78.7
29.9
Major BPS
87.2
0.92
0.8
77.7
37.1
Major PPT
71.4
0.48
1.1
66.5
43.2
Minor 5ss
38.9
-1.3
2.8
48.3
47.4
Minor BPS
65.4
0.57
1.3
80.14
35.5

Associated Gene:

Gene:
CIT
Ensembl Gene ID:
ENSAPLG00000009657
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045146
7562782 - 7633442
70661
ENSAPLT00000022538
7562782 - 7633898
71117
ENSAPLT00000010123
7562782 - 7633898
71117