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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_7640499_7640980_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7640499 - 7640980
Intron Length:
482

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCT|GTAAGTACA
5'SS Class:
major
3'SS Sequence:
CTCTTTTTTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
GTTATTTTCACA
Flanking Amino Acid:
VILNKDTGISCDPALLPEPN
Intron Amino Acid Position:
226

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.9
0.61
1.1
74
36.3
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
90.4
0.91
0.6
83.6
31.4
Minor 5ss
38.9
-1.2
2.7
53.8
42.8
Minor BPS
54.6
0.14
1.8
68.05
38.5

Associated Gene:

Gene:
PRKAB1
Ensembl Gene ID:
ENSAPLG00000009490
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009903
7640270 - 7647932
7663