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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_7641115_7642375_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
7641115 - 7642375
Intron Length:
1261

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTATGAGCA
5'SS Class:
major
3'SS Sequence:
ATCTCTCTGGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAA
U12 Branch Point Sequence:
AAATGTTTAACA
Flanking Amino Acid:
VDSQKCSDMSELSSSPPGPY
Intron Amino Acid Position:
181

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.7
0.58
1
63.2
35
Major BPS
78.5
0.71
0.9
69.7
37.1
Major PPT
73.2
0.52
1
69.6
36.1
Minor 5ss
36.9
-1.5
3.3
44.8
45.1
Minor BPS
60.9
0.34
1.7
67.8
38.4

Associated Gene:

Gene:
PRKAB1
Ensembl Gene ID:
ENSAPLG00000009490
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009903
7640270 - 7647932
7663