About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_7642491_7643472_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7642491 - 7643472
Intron Length:
982

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAATGCTT
5'SS Class:
strong_major
3'SS Sequence:
CGTTTCTTCCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTATTCTGACTT
Flanking Amino Acid:
DGQWTHDPSEPVVTSQLGTV
Intron Amino Acid Position:
143

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.6
0.72
1
75.3
40.4
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
80.6
0.69
0.8
72.7
37.5
Minor 5ss
36.8
-1.5
3.5
56.4
47.8
Minor BPS
57.8
0.32
1.7
77.16
39.6

Associated Gene:

Gene:
PRKAB1
Ensembl Gene ID:
ENSAPLG00000009490
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009903
7640270 - 7647932
7663