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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_7643567_7644996_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
7643567 - 7644996
Intron Length:
1430

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAATGAAC
5'SS Class:
strong_major
3'SS Sequence:
TTTTAAATTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTTGTTTTAAAT
Flanking Amino Acid:
NNWSKIPLTRSHNNFVAILD
Intron Amino Acid Position:
111

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.8
0.73
1
74.9
34.9
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
80.7
0.69
0.9
71.5
42.8
Minor 5ss
32.6
-2
3.1
42.6
44.5
Minor BPS
69
0.67
1.5
84.29
36.6

Associated Gene:

Gene:
PRKAB1
Ensembl Gene ID:
ENSAPLG00000009490
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009903
7640270 - 7647932
7663