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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_7645164_7646012_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7645164 - 7646012
Intron Length:
849

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGGCTG
5'SS Class:
strong_major
3'SS Sequence:
GTTGTGCTTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTGAT
U12 Branch Point Sequence:
TATTGATTAAAA
Flanking Amino Acid:
ADLFQSEEIKAPLEKEEFLA
Intron Amino Acid Position:
56

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.4
0.72
1
66.1
45.1
Major BPS
88.6
0.96
0.8
77.7
37.1
Major PPT
72.8
0.51
0.9
66.2
40.8
Minor 5ss
40.5
-1.1
3.3
55.3
48.9
Minor BPS
53.8
0.12
2.1
71.45
39.9

Associated Gene:

Gene:
PRKAB1
Ensembl Gene ID:
ENSAPLG00000009490
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009903
7640270 - 7647932
7663