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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_7662205_7670007_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7662205 - 7670007
Intron Length:
7803

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGTTGT
5'SS Class:
strong_major
3'SS Sequence:
TTCTCTTCTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
GTTGTTTTAAAT
Flanking Amino Acid:
NIVAFVFAVMALNSYNQGDI
Intron Amino Acid Position:
78

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.6
0.91
0.8
80.5
34.9
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
88.6
0.87
0.6
83.7
24.6
Minor 5ss
42.1
-0.9
2.9
55.5
43.9
Minor BPS
63.1
0.49
1.5
77.19
39.4

Associated Gene:

Gene:
TMEM233
Ensembl Gene ID:
ENSAPLG00000024733
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044645
7662007 - 7674626
12620