About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_7670178_7674535_R

Intron Information:

Intron Rank:
2
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
7670178 - 7674535
Intron Length:
4358

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGA|GTATATAGC
5'SS Class:
weak_major
3'SS Sequence:
GCTCTCCCCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GCCTCAT
U12 Branch Point Sequence:
GCAGCCTCATGT
Flanking Amino Acid:
LLLQSTVKSKSTDIKRALEN
Intron Amino Acid Position:
21

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
58.4
0.2
1.1
55.8
41.7
Major BPS
64.6
0.36
1.3
67.6
40.6
Major PPT
72.3
0.5
0.8
65.6
30.3
Minor 5ss
42.8
-0.8
2.6
49.8
41
Minor BPS
41.8
-0.5
2.1
53.48
47.3

Associated Gene:

Gene:
TMEM233
Ensembl Gene ID:
ENSAPLG00000024733
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044645
7662007 - 7674626
12620