Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_7760886_7762264_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

7760886 - 7762264

Intron Length:

1379

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTCAGTGAT

5'SS Class:

strong_major

3'SS Sequence:

TATATGTTTTCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TATATAT

U12 Branch Point Sequence:

CACGGCTTAACT

Flanking Amino Acid:

LSPDAQGQDRRACLSLCLSC

Intron Amino Acid Position:

121

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

82.3

0.76

1.2

81.4

32.7

Major BPS

71.4

0.53

67.3

39.3

Major PPT

80.8

0.69

0.9

77.3

41.4

Minor 5ss

29.8

-2.3

3.1

40.6

45.6

Minor BPS

54.7

0.23

68.36

48.3

Associated Gene:

Gene:

SRRM4

Ensembl Gene ID:

ENSAPLG00000009202

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000042682

7757652 - 7789398

31747

ENSAPLT00000009570

7757652 - 7763402

5751