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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_7762660_7776157_R

Intron Information:

Intron Rank:
3
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
7762660 - 7776157
Intron Length:
13498

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGGCCGTG
5'SS Class:
weak_major
3'SS Sequence:
AAAGTAAAACCAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
ATTTAAA
U12 Branch Point Sequence:
GTTTATTTAAAA
Flanking Amino Acid:
YLLGKRHGWLKQSPLKKCSN
Intron Amino Acid Position:
79

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
53.6
0.08
1.2
46.7
43.6
Major BPS
81.6
0.78
0.8
82
24.9
Major PPT
48.3
-0
1.1
35.7
43.1
Minor 5ss
38.8
-1.3
3.7
51.3
47.8
Minor BPS
64.9
0.46
1.6
74.66
36.2

Associated Gene:

Gene:
SRRM4
Ensembl Gene ID:
ENSAPLG00000009202
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042682
7757652 - 7789398
31747