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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_780515_781682_R

Intron Information:

Intron Rank:
150657
Intron Class:
major
Intron Phase:
Intron Coordinates:
780515 - 781682
Intron Length:
1168

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTAAGTCTT
5'SS Class:
major
3'SS Sequence:
TTTCTAATTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAT
U12 Branch Point Sequence:
CTTTTTCTAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.7
0.65
1
75.9
39.9
Major BPS
94.5
1.11
0.6
92.2
14.6
Major PPT
85.1
0.79
0.8
82.5
32.7
Minor 5ss
42.4
-0.8
3.1
65
39.9
Minor BPS
62.3
0.46
1.6
79.49
37.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028545
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022685
780463 - 795481
15019