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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_78062_82430_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
78062 - 82430
Intron Length:
4369

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGTTGC
5'SS Class:
strong_major
3'SS Sequence:
GTTTTTTCTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTGCAT
U12 Branch Point Sequence:
TTTGCATCAATG
Flanking Amino Acid:
NIVCSRLYDEVVDTSKSIAD
Intron Amino Acid Position:
75

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.7
0.96
0.8
78.3
32.5
Major BPS
75
0.62
1.4
85.7
34.9
Major PPT
90.5
0.91
0.7
89
28.1
Minor 5ss
35.1
-1.7
2.8
43.9
43.9
Minor BPS
51.7
-0
2
64.82
43.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018082
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021944
74477 - 95464
20988