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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_7841749_7845775_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
7841749 - 7845775
Intron Length:
4027

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGTCCC
5'SS Class:
strong_major
3'SS Sequence:
TTTATTTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTTAT
U12 Branch Point Sequence:
GTTGTTTTATTT
Flanking Amino Acid:
EDGKLYYDKRWYHKSQAIYL
Intron Amino Acid Position:
277

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86
0.85
0.9
71.5
38.5
Major BPS
78.7
0.71
1.2
71.7
44.6
Major PPT
92.5
0.96
0.7
88.4
28.6
Minor 5ss
35.6
-1.6
2.9
43.1
37.8
Minor BPS
54
0.2
1.7
71.36
40.7

Associated Gene:

Gene:
SUDS3
Ensembl Gene ID:
ENSAPLG00000008727
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009112
7838284 - 7858821
20538