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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_7846651_7847514_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7846651 - 7847514
Intron Length:
864

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGGATT
5'SS Class:
strong_major
3'SS Sequence:
TCTTTCCATGTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTCCAT
U12 Branch Point Sequence:
AGATCTGTAACA
Flanking Amino Acid:
IMEDLRTLNKLKSPKRPASP
Intron Amino Acid Position:
235

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.8
0.8
1
82.5
37
Major BPS
77.3
0.68
1.2
86.7
32.3
Major PPT
78.4
0.64
0.8
74.5
29.6
Minor 5ss
36.8
-1.5
3.6
56.4
48
Minor BPS
56.1
0.19
2
67.34
38.9

Associated Gene:

Gene:
SUDS3
Ensembl Gene ID:
ENSAPLG00000008727
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009112
7838284 - 7858821
20538