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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_7847577_7849108_R

Intron Information:

Intron Rank:
7
Intron Class:
minor
Intron Phase:
1
Intron Coordinates:
7847577 - 7849108
Intron Length:
1532

Sequence Information:

Terminal Dinucleotides:
AT-AC
5'SS Sequence:
CTG|ATATCCTTT
5'SS Class:
strong_minor
3'SS Sequence:
TAATTCTGGATAC|C
3'SS Class:
minor_BPS
U2 Branch Point Sequence:
CCTTAAT
U12 Branch Point Sequence:
GGAACCTTAATT
Flanking Amino Acid:
IPDKRRKPAPAQLNYLLTDE
Intron Amino Acid Position:
214

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
35.4
-0.9
3.4
55
44.6
Major BPS
74.6
0.61
1.1
75.5
35.1
Major PPT
36.5
-0.7
3.2
50.3
43.5
Minor 5ss
99
1.63
0.6
96.7
10.2
Minor BPS
69.6
0.69
1.3
75.79
40.3

Associated Gene:

Gene:
SUDS3
Ensembl Gene ID:
ENSAPLG00000008727
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009112
7838284 - 7858821
20538