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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_7853499_7854061_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7853499 - 7854061
Intron Length:
563

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAAGTACT
5'SS Class:
strong_major
3'SS Sequence:
TGGTTTGCATTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTTTTAT
U12 Branch Point Sequence:
ACTGTTTTATCT
Flanking Amino Acid:
RNAELFLQLETDQVEKNYVK
Intron Amino Acid Position:
130

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.8
0.89
0.9
87.3
26.9
Major BPS
78.7
0.71
1.2
71.7
44.6
Major PPT
64.3
0.32
1
63.7
42.8
Minor 5ss
40.1
-1.1
2.8
53.2
37.3
Minor BPS
53.2
0.18
1.7
68.89
42.9

Associated Gene:

Gene:
SUDS3
Ensembl Gene ID:
ENSAPLG00000008727
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009112
7838284 - 7858821
20538