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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_7854082_7855582_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
7854082 - 7855582
Intron Length:
1501

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGCTGG
5'SS Class:
strong_major
3'SS Sequence:
TCTCTTCTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATAAA
U12 Branch Point Sequence:
TTTGAGATAATA
Flanking Amino Acid:
QQYKERIRNAELFLQLETDQ
Intron Amino Acid Position:
123

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.3
0.88
0.9
69.7
43.7
Major BPS
70.8
0.52
1
70.6
31.6
Major PPT
89.9
0.9
0.6
88.2
21.5
Minor 5ss
43.2
-0.7
2.9
55.9
48.3
Minor BPS
44.6
-0.4
2.4
64.97
41.7

Associated Gene:

Gene:
SUDS3
Ensembl Gene ID:
ENSAPLG00000008727
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009112
7838284 - 7858821
20538