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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_7855655_7856075_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
7855655 - 7856075
Intron Length:
421

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGCTTT
5'SS Class:
strong_major
3'SS Sequence:
TATTTCAACCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAA
U12 Branch Point Sequence:
TTTATTTCAACC
Flanking Amino Acid:
LKRQLQQLQEGTLQEYQKRM
Intron Amino Acid Position:
99

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.4
1
0.8
87.9
29.3
Major BPS
82
0.79
0.8
83.7
25.7
Major PPT
67.5
0.4
0.9
60.4
40.2
Minor 5ss
49.8
-0
2.8
73.2
43.7
Minor BPS
63.6
0.41
1.5
74.89
35.5

Associated Gene:

Gene:
SUDS3
Ensembl Gene ID:
ENSAPLG00000008727
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009112
7838284 - 7858821
20538