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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_7856132_7857128_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
7856132 - 7857128
Intron Length:
997

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCA|GTAAGTAAC
5'SS Class:
major
3'SS Sequence:
TTGAACTTCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATATAAA
U12 Branch Point Sequence:
TGTTCTTGAACT
Flanking Amino Acid:
EEEDYVEMKEQMYQDKLASL
Intron Amino Acid Position:
80

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.9
0.66
1
75.5
34.3
Major BPS
69.8
0.49
1
70.3
31.8
Major PPT
72.1
0.5
1
65.7
40.5
Minor 5ss
38.2
-1.3
2.8
51.4
39.2
Minor BPS
77
0.93
1.3
89.89
33.8

Associated Gene:

Gene:
SUDS3
Ensembl Gene ID:
ENSAPLG00000008727
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009112
7838284 - 7858821
20538