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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_7857199_7858652_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
7857199 - 7858652
Intron Length:
1454

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTTGGTGGC
5'SS Class:
major
3'SS Sequence:
TTACCTCACTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAC
U12 Branch Point Sequence:
TGTTTTTTACCT
Flanking Amino Acid:
RSARARDSDEDTEDASETDL
Intron Amino Acid Position:
57

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
62.4
0.29
1.3
55.6
43.2
Major BPS
89.7
0.98
0.7
89.9
20
Major PPT
67.9
0.4
0.9
66.9
34.2
Minor 5ss
27.6
-2.6
3.1
27.2
36.6
Minor BPS
68.3
0.65
1.6
83.79
37.4

Associated Gene:

Gene:
SUDS3
Ensembl Gene ID:
ENSAPLG00000008727
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009112
7838284 - 7858821
20538