About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_7905420_7906648_F

Intron Information:

Intron Rank:
2
Intron Class:
major-like
Intron Phase:
5UTR
Intron Coordinates:
7905420 - 7906648
Intron Length:
1229

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGCTTC
5'SS Class:
weak_major
3'SS Sequence:
ACTTTCTCACCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AGATAAA
U12 Branch Point Sequence:
ACTTTCTCACCA
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.9
0.77
0.9
74.9
36.3
Major BPS
54.7
0.12
1.2
56.1
37.3
Major PPT
74.4
0.55
0.9
67.4
38.5
Minor 5ss
65.8
0.53
2.2
76
40.1
Minor BPS
52.7
0.08
1.8
65.27
41.4

Associated Gene:

Gene:
TAOK3
Ensembl Gene ID:
ENSAPLG00000012433
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043988
7867014 - 7952449
85436
ENSAPLT00000013041
7867014 - 7952449
85436