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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_7911717_7912707_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7911717 - 7912707
Intron Length:
991

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGATGG
5'SS Class:
strong_major
3'SS Sequence:
TTGTTTTTATTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTCAT
U12 Branch Point Sequence:
TTGTTTTTATTA
Flanking Amino Acid:
MSYSGKQTNEKWQDIIKEVK
Intron Amino Acid Position:
65

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.1
0.92
0.9
72.5
39.9
Major BPS
87.1
0.92
0.7
85.9
22.5
Major PPT
80.7
0.69
0.9
82.3
34.1
Minor 5ss
37.3
-1.4
3
47.6
47.9
Minor BPS
61.1
0.34
1.5
69.94
37.5

Associated Gene:

Gene:
TAOK3
Ensembl Gene ID:
ENSAPLG00000012433
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043988
7867014 - 7952449
85436
ENSAPLT00000013041
7867014 - 7952449
85436